# Licensed under a 3-clause BSD style license - see LICENSE.rst
from . import core
from ...extern import six
from ...table import Table
from . import cparser
from ...extern.six.moves import zip as izip
from ...utils import OrderedDict
import re
@six.add_metaclass(core.MetaBaseReader)
[docs]class FastBasic(object):
"""
This class is intended to handle the same format addressed by the
ordinary :class:`Basic` writer, but it acts as a wrapper for underlying C
code and is therefore much faster. Unlike the other ASCII readers and
writers, this class is not very extensible and is restricted
by optimization requirements.
"""
_format_name = 'fast_basic'
_description = 'Basic table with custom delimiter using the fast C engine'
_fast = True
fill_extra_cols = False
guessing = False
strict_names = False
def __init__(self, default_kwargs={}, **user_kwargs):
kwargs = default_kwargs.copy()
kwargs.update(user_kwargs) # user kwargs take precedence over defaults
delimiter = kwargs.pop('delimiter', ' ')
self.delimiter = str(delimiter) if delimiter is not None else None
self.write_comment = kwargs.get('comment', '# ')
self.comment = kwargs.pop('comment', '#')
if self.comment is not None:
self.comment = str(self.comment)
self.quotechar = str(kwargs.pop('quotechar', '"'))
self.header_start = kwargs.pop('header_start', 0)
# If data_start is not specified, start reading
# data right after the header line
data_start_default = user_kwargs.get('data_start', self.header_start +
1 if self.header_start is not None else 1)
self.data_start = kwargs.pop('data_start', data_start_default)
self.kwargs = kwargs
self.strip_whitespace_lines = True
self.strip_whitespace_fields = True
def _read_header(self):
# Use the tokenizer by default -- this method
# can be overridden for specialized headers
self.engine.read_header()
[docs] def read(self, table):
"""
Read input data (file-like object, filename, list of strings, or
single string) into a Table and return the result.
"""
if self.comment is not None and len(self.comment) != 1:
raise core.ParameterError("The C reader does not support a comment regex")
elif self.data_start is None:
raise core.ParameterError("The C reader does not allow data_start to be None")
elif self.header_start is not None and self.header_start < 0 and \
not isinstance(self, FastCommentedHeader):
raise core.ParameterError("The C reader does not allow header_start to be "
"negative except for commented-header files")
elif self.data_start < 0:
raise core.ParameterError("The C reader does not allow data_start to be negative")
elif len(self.delimiter) != 1:
raise core.ParameterError("The C reader only supports 1-char delimiters")
elif len(self.quotechar) != 1:
raise core.ParameterError("The C reader only supports a length-1 quote character")
elif 'converters' in self.kwargs:
raise core.ParameterError("The C reader does not support passing "
"specialized converters")
elif 'Outputter' in self.kwargs:
raise core.ParameterError("The C reader does not use the Outputter parameter")
elif 'Inputter' in self.kwargs:
raise core.ParameterError("The C reader does not use the Inputter parameter")
elif 'data_Splitter' in self.kwargs or 'header_Splitter' in self.kwargs:
raise core.ParameterError("The C reader does not use a Splitter class")
self.engine = cparser.CParser(table, self.strip_whitespace_lines,
self.strip_whitespace_fields,
delimiter=self.delimiter,
header_start=self.header_start,
comment=self.comment,
quotechar=self.quotechar,
data_start=self.data_start,
fill_extra_cols=self.fill_extra_cols,
**self.kwargs)
conversion_info = self._read_header()
self.check_header()
if conversion_info is not None:
try_int, try_float, try_string = conversion_info
else:
try_int = {}
try_float = {}
try_string = {}
data, comments = self.engine.read(try_int, try_float, try_string)
meta = OrderedDict()
if comments:
meta['comments'] = comments
return Table(data, names=list(self.engine.get_names()), meta=meta)
[docs] def write(self, table, output):
"""
Use a fast Cython method to write table data to output,
where output is a filename or file-like object.
"""
self._write(table, output, {})
def _write(self, table, output, default_kwargs,
header_output=True, output_types=False):
write_kwargs = {'delimiter': self.delimiter,
'quotechar': self.quotechar,
'strip_whitespace': self.strip_whitespace_fields,
'comment': self.write_comment
}
write_kwargs.update(default_kwargs)
# user kwargs take precedence over default kwargs
write_kwargs.update(self.kwargs)
writer = cparser.FastWriter(table, **write_kwargs)
writer.write(output, header_output, output_types)
[docs]class FastCsv(FastBasic):
"""
A faster version of the ordinary :class:`Csv` writer that uses the
optimized C parsing engine. Note that this reader will append empty
field values to the end of any row with not enough columns, while
:class:`FastBasic` simply raises an error.
"""
_format_name = 'fast_csv'
_description = 'Comma-separated values table using the fast C engine'
_fast = True
fill_extra_cols = True
def __init__(self, **kwargs):
super(FastCsv, self).__init__({'delimiter': ',', 'comment': None}, **kwargs)
[docs] def write(self, table, output):
"""
Override the default write method of `FastBasic` to
output masked values as empty fields.
"""
self._write(table, output, { 'fill_values': [(core.masked, '')] })
[docs]class FastTab(FastBasic):
"""
A faster version of the ordinary :class:`Tab` reader that uses
the optimized C parsing engine.
"""
_format_name = 'fast_tab'
_description = 'Tab-separated values table using the fast C engine'
_fast = True
def __init__(self, **kwargs):
super(FastTab, self).__init__({'delimiter': '\t'}, **kwargs)
self.strip_whitespace_lines = False
self.strip_whitespace_fields = False
[docs]class FastRdb(FastBasic):
"""
A faster version of the :class:`Rdb` reader. This format is similar to
tab-delimited, but it also contains a header line after the column
name line denoting the type of each column (N for numeric, S for string).
"""
_format_name = 'fast_rdb'
_description = 'Tab-separated with a type definition header line'
_fast = True
def __init__(self, **kwargs):
super(FastRdb, self).__init__({'delimiter': '\t', 'data_start': 2}, **kwargs)
self.strip_whitespace_lines = False
self.strip_whitespace_fields = False
def _read_header(self):
tmp = self.engine.source
line1 = ''
line2 = ''
for line in tmp.splitlines():
# valid non-comment line
if not line1 and line.strip() and line.lstrip()[0] != self.comment:
line1 = line
elif not line2 and line.strip() and line.lstrip()[0] != self.comment:
line2 = line
break
else: # less than 2 lines in table
raise ValueError('RDB header requires 2 lines')
# tokenize the two header lines separately
self.engine.setup_tokenizer([line2])
self.engine.header_start = 0
self.engine.read_header()
types = self.engine.get_names()
self.engine.setup_tokenizer([line1])
self.engine.set_names([])
self.engine.read_header()
if len(self.engine.get_names()) != len(types):
raise ValueError('RDB header mismatch between number of '
'column names and column types')
if any(not re.match(r'\d*(N|S)$', x, re.IGNORECASE) for x in types):
raise ValueError('RDB type definitions do not all match '
'[num](N|S): {0}'.format(types))
try_int = {}
try_float = {}
try_string = {}
for name, col_type in izip(self.engine.get_names(), types):
if col_type[-1].lower() == 's':
try_int[name] = 0
try_float[name] = 0
try_string[name] = 1
else:
try_int[name] = 1
try_float[name] = 1
try_string[name] = 0
self.engine.setup_tokenizer(tmp)
return (try_int, try_float, try_string)
[docs] def write(self, table, output):
"""
Override the default writing behavior in `FastBasic` to
output a line with column types after the column name line.
"""
self._write(table, output, {}, output_types=True)