import matplotlib as mpl import matplotlib.pyplot as plt # Construct a 2D-histogram with variable bin width. First define the bin # edges: xedges = [0, 1, 1.5, 3, 5] yedges = [0, 2, 3, 4, 6] # Next we create a histogram H with random bin content: x = np.random.normal(3, 1, 100) y = np.random.normal(1, 1, 100) H, xedges, yedges = np.histogram2d(y, x, bins=(xedges, yedges)) # Or we fill the histogram H with a determined bin content: H = np.ones((4, 4)).cumsum().reshape(4, 4) print H[::-1] # This shows the bin content in the order as plotted # [[ 13. 14. 15. 16.] # [ 9. 10. 11. 12.] # [ 5. 6. 7. 8.] # [ 1. 2. 3. 4.]] # Imshow can only do an equidistant representation of bins: fig = plt.figure(figsize=(7, 3)) ax = fig.add_subplot(131) ax.set_title('imshow: equidistant') im = plt.imshow(H, interpolation='nearest', origin='low', # extent=[xedges[0], xedges[-1], yedges[0], yedges[-1]]) # pcolormesh can display exact bin edges: ax = fig.add_subplot(132) ax.set_title('pcolormesh: exact bin edges') X, Y = np.meshgrid(xedges, yedges) ax.pcolormesh(X, Y, H) ax.set_aspect('equal') # NonUniformImage displays exact bin edges with interpolation: ax = fig.add_subplot(133) ax.set_title('NonUniformImage: interpolated') im = mpl.image.NonUniformImage(ax, interpolation='bilinear') xcenters = xedges[:-1] + 0.5 * (xedges[1:] - xedges[:-1]) ycenters = yedges[:-1] + 0.5 * (yedges[1:] - yedges[:-1]) im.set_data(xcenters, ycenters, H) ax.images.append(im) ax.set_xlim(xedges[0], xedges[-1]) ax.set_ylim(yedges[0], yedges[-1]) ax.set_aspect('equal') plt.show()