.. VDAT: Virus Data Analysis Tool documentation master file, created by
   sphinx-quickstart on Thu Jun 11 17:58:50 2015.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

Welcome to VDAT: Virus Data Analysis Tool's documentation!
==========================================================

The Virus Data Analysis Tool (VDAT) software is a GUI tool to reduce data from
`Hobby-Eberly Telescope (HET)
<http://www.as.utexas.edu/mcdonald/het/het.html>`_ observations.  The software
is being created specifically for `HET Dark Energy Experiment (HETDEX)
<http://hetdex.org>`_, but we try to design it to be easily extended to other
user cases.

.. warning::

  This documentation and the VDAT code are very much a work in progress.


Use the Code
------------
.. toctree::
   :maxdepth: 2

   install
   executables
   launching
   queue
   dirstruct
   command_intepreter
   gui

.. todo::
    
    Add some instruction about the loggers settings

Code development
----------------

.. toctree::
    :maxdepth: 2

    contributions

Code Documentation
------------------

.. toctree::
   :maxdepth: 2 

   codedoc/command_interpreter
   codedoc/reduction
   codedoc/config
   codedoc/gui


About
-----

.. toctree::
   :maxdepth: 2
   
   authors
   license
   changelog
   todo


Links
-----

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`