ArcLineList Class Reference

Public Member Functions

• ArcLineList (const string &filename)
• virtual ~ArcLineList ()
• void read_linelist (const string &linelistfile)
• MArray< float, 2 > getActiveLines ()
• MArray< float, 2 > getNonActiveLines ()
• MArray< float, 1 > getActiveWLs ()
• float getActiveWL (const int index)
• float getActivePXpos (const int index)
• MArray< float, 1 > getActivePXpos ()
• int getNumActiveLines ()
• int getNumNonActiveLines ()

Private Attributes

• string linelistfile_
• MArray< float, 2 > lines_

---

Constructor & Destructor Documentation

ArcLineList::ArcLineList

(

const string &

filename

)

References read_linelist().

ArcLineList::~ArcLineList

(

)

[virtual]

---

Member Function Documentation

void ArcLineList::read_linelist

(

const string &

linelistfile

)

Reads arc line list.

Reads arc line list.

Parameters:

linelistfile

string name of the line list file

References linelistfile_, and lines_.

Referenced by ArcLineList().

MArray< float, 2 > ArcLineList::getActiveLines

(

)

Returns list of lines that are marked as "active" in the corresponding lines.par file

References getNumActiveLines(), and lines_.

MArray< float, 2 > ArcLineList::getNonActiveLines

(

)

Returns list of lines that are not marked as "active" in the corresponding lines.par file

References getNumNonActiveLines(), and lines_.

MArray< float, 1 > ArcLineList::getActiveWLs

(

)

Returns list of calibration wavelengths that are marked as "active" in the corresponding lines.par file

References getNumActiveLines(), and lines_.

Referenced by fit_initial_dist(), main(), and VirusHealth::validate_peaks().

float ArcLineList::getActiveWL

(

const int

index

)

Returns single calibration wavelength with index i out of list of lines that are marked as "active" in the corresponding lines.par file

References getNumActiveLines(), and lines_.

Referenced by Measure::correlate(), fit_initial_dist(), and main().

float ArcLineList::getActivePXpos

(

const int

index

)

Returns single calibration pixel position with index i out of list of lines that are marked as "active" in the corresponding lines.par file

References getNumActiveLines(), and lines_.

Referenced by Measure::correlate().

MArray< float, 1 > ArcLineList::getActivePXpos

(

)

Returns list of calibration pixel positions that are marked as "active" in the corresponding lines.par file

References getNumActiveLines(), and lines_.

int ArcLineList::getNumActiveLines

(

)

Returns total number of lines that are marked as "active" in the corresponding lines.par file

References lines_.

Referenced by Measure::correlate(), fit_initial_dist(), getActiveLines(), getActivePXpos(), getActiveWL(), getActiveWLs(), main(), and VirusHealth::validate_peaks().

int ArcLineList::getNumNonActiveLines

(

)

Returns total number of lines that are not marked as "active" in the corresponding lines.par file

References lines_.

Referenced by getNonActiveLines().

---

Field Documentation

string ArcLineList::linelistfile_ [private]

Referenced by read_linelist().

MArray<float,2> ArcLineList::lines_ [private]

Referenced by getActiveLines(), getActivePXpos(), getActiveWL(), getActiveWLs(), getNonActiveLines(), getNumActiveLines(), getNumNonActiveLines(), and read_linelist().